2WC0

CRYSTAL STRUCTURE OF HUMAN INSULIN DEGRADING ENZYME IN COMPLEX WITH IODINATED INSULIN

Structural Biology Knowledgebase: 2WC0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 2WC0

Classification: HYDROLASE / HORMONE

Total Structure Weight: 241593.97

Macromolecule Entities
Molecule Chains Length Organism Details
INSULIN-DEGRADING ENZYME A, B 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Fragment: RESIDUES 42-1019
Mutation: C110L, E111Q, C171S, C178A, C257V, C414L, C573N, C590S, C789S, C812A, C819A, C904S, C966N, C974A
Gene Name(s): IDE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
INSULIN A CHAIN C, E 21 Homo sapiens Fragment: RESIDUES 90-110
Gene Name(s): INS Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
INSULIN B CHAIN D, F 30 Homo sapiens Fragment: RESIDUES 25-54
Gene Name(s): INS Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DIO
Query on DIO

A, B 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.170
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 263.17 α = 90.00
b = 263.17 β = 90.00
c = 90.88 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-06
  • Released Date: 2009-03-24
  • Deposition author(s): Manolopoulou, M., Guo, Q., Malito, E., Schilling, A.B., Tang, W.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4