NMR Ensemble

2TOB

SOLUTION STRUCTURE OF THE TOBRAMYCIN-RNA APTAMER COMPLEX, NMR, 13 STRUCTURES

Structural Biology Knowledgebase: 2TOB SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 13
  • Selection Criteria: Lowest Noe and Total Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2TOB

Classification: RNA

Total Structure Weight: 6935.45

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*CP*UP*UP*GP*GP*UP*UP*UP*AP*GP*GP*UP*AP*AP*UP*GP*AP*GP*U)-3') A 20 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TOA
Query on TOA

A 3-DEOXY-3-AMINO GLUCOSE
C6 H14 N O5
BQCCAEOLPYCBAE-RXRWUWDJSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TOC
Query on TOC

A 2,3,6-TRIDEOXY-2,6-DIAMINO GLUCOSE
C6 H16 N2 O3
CEGXIUROHCNLCL-MOJAZDJTSA-P
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2TB
Query on 2TB

A 1,3-DIAMINO-4,5,6-TRIHYDROXY-CYCLOHEXANE
C6 H16 N2 O3
DTFAJAKTSMLKAT-JDCCYXBGSA-P
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 40
  • Conformers Submitted: 13
  • Selection Criteria: LOWEST NOE AND TOTAL ENERGY

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-06-17
  • Released Date: 1999-06-22
  • Deposition author(s): Jiang, L., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4