2QNB

Glycogen Phosphorylase b in complex with N-benzoyl-N'-beta-D-glucopyranosyl urea


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 2QNB

Classification: TRANSFERASE

Total Structure Weight: 98171.92

Macromolecule Entities
Molecule Chains Length Organism Details
Glycogen phosphorylase, muscle form A 842 Oryctolagus cuniculus EC#: 2.4.1.1 IUBMB
Gene Name(s): PYGM Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BZD
Query on BZD

A N-BENZOYL-N'-BETA-D-GLUCOPYRANOSYL UREA
C14 H18 N2 O7
JSBCZGSPFATCOV-BZNQNGANSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BZD Ki: 4600 nM (100) BindingDB

N/A in BindingMoad
Ki: 4600 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
LLP
Query on LLP
A L-PEPTIDE LINKING C14 H22 N3 O7 P LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.199
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 128.65 α = 90.00
b = 128.65 β = 90.00
c = 116.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-18
  • Released Date: 2008-07-22
  • Deposition author(s): Chrysina, E.D., Tiraidis, C., Alexacou, K.-M., Zographos, S.E., Leonidas, D.D., Oikonomakos, N.G.

Revision History

  • 2011-07-13
    Type: Version format compliance