2QGV

Crystal structure of hydrogenase-1 operon protein hyaE from Shigella flexneri. Northeast Structural Genomics Consortium Target SfR170

PDB DOI: https://doi.org/10.2210/pdb2QGV/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Shigella flexneri 2a str. 301
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-06-29 Released: 2007-07-17
Deposition Author(s): Forouhar, F., Su, M., Seetharaman, J., Benach, J., Wang, D., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.292
R-Value Work: 0.253
R-Value Observed: 0.253

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of hydrogenase-1 operon protein hyaE from Shigella flexneri.

Forouhar, F., Su, M., Seetharaman, J., Benach, J., Wang, D., Fang, Y., Cunningham, K., Ma, L.-C., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 161.13 kDa
Atom Count: 9,610
Modelled Residue Count: 1,210
Deposited Residue Count: 1,400
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hydrogenase-1 operon protein hyaE	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	140	Shigella flexneri 2a str. 301	Mutation(s): 4 Gene Names: hyaE, SF0977, S_1044
UniProt
Find proteins for A0A2S4MV65 (Shigella flexneri) Explore A0A2S4MV65 Go to UniProtKB: A0A2S4MV65
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2S4MV65
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.292
R-Value Work: 0.253
R-Value Observed: 0.253
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.172	α = 90
b = 215.777	β = 94.8
c = 64.069	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHELXD	phasing
SOLVE	phasing
RESOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-07-17

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-07-17
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2018-01-24
Changes: Database references, Structure summary