2PZX

Structure of the methuselah ectodomain with peptide inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.407 
  • R-Value Work: 0.376 
  • R-Value Observed: 0.376 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Extension of Drosophila melanogaster life span with a GPCR peptide inhibitor.

Ja, W.W.West, A.P.Delker, S.L.Bjorkman, P.J.Benzer, S.Roberts, R.W.

(2007) Nat Chem Biol 3: 415-419

  • DOI: https://doi.org/10.1038/nchembio.2007.2
  • Primary Citation of Related Structures:  
    2PZX

  • PubMed Abstract: 

    G protein-coupled receptors (GPCRs) mediate signaling from extracellular ligands to intracellular signal transduction proteins. Methuselah (Mth) is a class B (secretin-like) GPCR, a family typified by their large, ligand-binding, N-terminal extracellular domains. Downregulation of mth increases the life span of Drosophila melanogaster; inhibitors of Mth signaling should therefore enhance longevity. We used mRNA display selection to identify high-affinity (K(d) = 15 to 30 nM) peptide ligands that bind to the N-terminal ectodomain of Mth. The selected peptides are potent antagonists of Mth signaling, and structural studies suggest that they perturb the interface between the Mth ecto- and transmembrane domains. Flies constitutively expressing a Mth antagonist peptide have a robust life span extension, which suggests that the peptides inhibit Mth signaling in vivo. Our work thus provides new life span-extending ligands for a metazoan and a general approach for the design of modulators of this important class of GPCRs.


  • Organizational Affiliation

    Division of Biology, 1200 E. California Blvd. 156-29, California Institute of Technology, Pasadena, California 91125, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
G-protein coupled receptor Mth
A, B, C, D
188Drosophila melanogasterMutation(s): 0 
Gene Names: mth
UniProt
Find proteins for O97148 (Drosophila melanogaster)
Explore O97148 
Go to UniProtKB:  O97148
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO97148
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.407 
  • R-Value Work: 0.376 
  • R-Value Observed: 0.376 
  • Space Group: P 42
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 94.233α = 90
b = 94.233β = 90
c = 173.833γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
PDB_EXTRACTdata extraction
AMoREphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-08-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-10-18
    Changes: Refinement description
  • Version 1.3: 2023-08-30
    Changes: Data collection, Database references, Refinement description