Crystal structure of CD1d-lipid-antigen complexed with Beta-2-Microglobulin, NKT15 Alpha-Chain and NKT15 Beta-Chain     DOI:10.2210/pdb2po6/pdb

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Primary Citation       Molecular Description Hide Classification: Lipid Binding Protein/immune System Structure Weight: 191077.45   Molecule: T-cell surface glycoprotein CD1d Polymer: 1 Type: polypeptide(L) Length: 278 Chains: A, E Molecule: Beta-2-microglobulin Polymer: 2 Type: polypeptide(L) Length: 99 Chains: B, F Fragment: beta-2-microglobulin Molecule: NKT15 alpha-chain Polymer: 3 Type: polypeptide(L) Length: 204 Chains: C, G Molecule: NKT15 beta-chain Polymer: 4 Type: polypeptide(L) Length: 244 Chains: D, H       Source Hide Polymer: 1 Scientific Name: Homo sapiens Common Name: Human Expression System: Trichoplusia ni   Polymer: 2 Scientific Name: Homo sapiens Common Name: Human Expression System: Trichoplusia ni   Polymer: 3 Scientific Name: Homo sapiens Common Name: Human Expression System: Escherichia coli   Polymer: 4 Scientific Name: Homo sapiens Common Name: Human Expression System: Escherichia coli   Polymer: 6 Scientific Name: Synthetic construct   Polymer: 7 Scientific Name: Synthetic construct         Ligand Chemical Component Hide Identifier Name Formula Interaction View Links AGH     N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]- 2,3 -DIHYDROXYHEPTADECYL}HEXACOSANAMIDE C50 H99 N O9 Ligand Explorer MAN     ALPHA-D-MANNOSE C6 H12 O6 Ligand Explorer NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 Ligand Explorer       Derived Data Hide SCOP Classification v1.75 - (6 Domains) CATH Classification v3.2.0 - (12 Domains) PFAM Classification - (16 Domains) GO Terms - (28 Terms)     Reset Layout

Biological Assembly 1     More Images... View in Jmol Other Viewers close KiNG WebMol QuickPDB FirstGlance Kiosk SimpleViewer Protein Workshop Ligand Explorer Biological assembly 1 assigned by authors and generated by PISA (software) Biological assembly 2 assigned by authors and generated by PISA (software)         Deposition Summary Hide Authors:   Borg, N.A. Deposition:   2007-04-25 Release:   2007-07-03 Last Modified (REVDAT):   2009-09-15       Experimental Details Hide Method:   X-RAY DIFFRACTION Experimental Data:    [ EDS ] Resolution[Å]: 3.20 R-Value: 0.229 (obs.) R-Free: 0.293 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 204.01 α = 90.00  b = 155.64 β = 94.78  c = 85.98 γ = 90.00        Structure Links Hide Molecule of the Month Features: Major Histocompatibility Complex T-Cell Receptor