2P3D

Crystal Structure of the multi-drug resistant mutant subtype F HIV protease complexed with TL-3 inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 2P3D

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 22634.60

Macromolecule Entities
Molecule Chains Length Organism Details
Pol protein A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: HIV-1 protease
Gene Name(s): pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3TL
Query on 3TL

A benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10- dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13- bis(1-methylethyl)-2,5,12,15,18-pentaoxo- 20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos- 1-yl]carbamate
TL-3, C2 symmetric inhibitor (Synonym)
C50 H64 N6 O10
BJJPNOGMLLUCER-KUTQPOQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3TL N/A in BindingDB
N/A in BindingMoad
Ki: 180 nM  PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000434
Query on PRD_000434
A N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.183
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 61.25 α = 90.00
b = 61.25 β = 90.00
c = 82.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-08
  • Released Date: 2007-04-24
  • Deposition author(s): Sanches, M., Krauchenco, S., Martins, N.H., Gustchina, A., Wlodawer, A., Polikarpov, I.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • 2013-02-27
    Type: Other