2OOK

Crystal structure of a protein with unknown function (YP_749275.1) from Shewanella Frigidimarina NCIMB 400 at 1.80 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 2OOK

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 29809.06

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein A, B 127 Shewanella frigidimarina Mutation: M1M, M3M, M40M
Gene Name(s): Sfri_0576
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 80.58 α = 90.00
b = 40.41 β = 92.23
c = 78.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-25
  • Released Date: 2007-02-06
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Source and taxonomy, Version format compliance