2OI2

Streptococcus pneumoniae Mevalonate Kinase in Complex with Diphosphomevalonate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 2OI2

Classification: TRANSFERASE

Total Structure Weight: 31796.44

Macromolecule Entities
Molecule Chains Length Organism Details
Mevalonate kinase A 292 Streptococcus pneumoniae EC#: 2.7.1.36 IUBMB
Gene Name(s): mvaK1 SP_0381
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DP6
Query on DP6

A (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}- 3-METHYLPENTANOIC ACID
C6 H14 O10 P2
SIGQQUBJQXSAMW-ZCFIWIBFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DP6 N/A in BindingDB
Kd: 500 nM  BindingMOAD
Kd: 500 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.211
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 101.60 α = 90.00
b = 101.60 β = 90.00
c = 83.28 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-10
  • Released Date: 2007-05-01
  • Deposition author(s): Andreassi, J.L., Bilder, P.W., Vetting, M.W., Roderick, S.L., Leyh, T.S.

Revision History

  • Version 1_0: 2007-05-01

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance