2O4P

Crystal Structure of HIV-1 Protease (Q7K) in Complex with Tipranavir

Structural Biology Knowledgebase: 2O4P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O4P

Classification: Viral Protein

Total Structure Weight: 22304.56

Macromolecule Entities
Molecule Chains Length Organism Details
protease A, B 99 Human immunodeficiency virus 1 Mutation: Q7K

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
TPV
Query on TPV

A N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL- 6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)- 5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
TIPRANAVIR (Synonym)
C31 H33 F3 N2 O5 S
SUJUHGSWHZTSEU-FYBSXPHGSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TPV N/A in BindingDB
Kd: 0.019 nM  BindingMOAD
Kd: 0.019 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.200
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 58.61 α = 90.00
b = 86.26 β = 90.00
c = 45.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-04
  • Released Date: 2006-12-12
  • Deposition author(s): Kang, L.W., Armstrong, A.A., Muzammil, S., Jakalian, A., Bonneau, P.R., Schmelmer, V., Freire, E., Amzel, L.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values