2O45

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Structural Biology Knowledgebase: 2O45 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Work:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O45

Classification: RNA

Total Structure Weight: 934378.44

Macromolecule Entities
Molecule Chains Length Organism Details
23S rRNA A 2880 Deinococcus radiodurans

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RU6
Query on RU6

A (3AS,4R,7R,8S,9S,10R,11R,13R,15R,15AR)-4- ETHYL-11-METHOXY-3A,7,9,11,13,15-HEXAMETHYL- 2,6,14-TRIOXO-1-[4-(4-PYRIDIN-3-YL-1H-IMIDAZOL- 1-YL)BUTYL]-10-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)- BETA-D-XYLO-HEXOPYRANOSYL]OXY}TETRADECAHYDRO- 2H-OXACYCLOTETRADECINO[4,3-D][1,3]OXAZOL- 8-YL 2,6-DIDEOXY-3-C-METHYL-3-O-METHYL-ALPHA- L-RIBO-HEXOPYRANOSIDE
4,,2R (Synonym)
C51 H81 N5 O13
LSUFMKOMGWIEMZ-IBNZHXLDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Observed:
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 170.01 α = 90.00
b = 411.48 β = 90.00
c = 697.62 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2006-12-03
  • Released Date: 2007-12-04
  • Deposition author(s): Baram, D., Pyetan, E., Auerbach-Nevo, T., Yonath, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4