2O1V

Structure of full length GRP94 with ADP bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 2O1V

Classification: CHAPERONE

Total Structure Weight: 154143.66

Macromolecule Entities
Molecule Chains Length Organism Details
Endoplasmin A, B 666 Canis lupus Fragment: residues 73-754
Gene Name(s): HSP90B1 Gene View GRP94 TRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ADP EC50: 21000 nM (93) BindingDB
IC50: 11447 nM (93) BindingDB

Kd: 5000 nM  BindingMOAD
Kd: 5000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.248
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 99.08 α = 90.00
b = 108.85 β = 90.00
c = 148.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-29
  • Released Date: 2007-10-23
  • Deposition author(s): Dollins, D.E., Warren, J.J., Immormino, R.M., Gewirth, D.T.

Revision History

  • Version 1_0: 2007-10-23

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Derived calculations, Version format compliance

  • Version 1_2: 2017-08-02

    Type: Source and taxonomy

  • Version 1_3: 2017-10-18

    Type: Refinement description