2NWB

Crystal Structure of a Putative 2,3-dioxygenase (SO4414) from Shewanella oneidensis in complex with ferric heme. Northeast Structural Genomics Target SoR52.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 2NWB

Classification: OXIDOREDUCTASE

Total Structure Weight: 92836.95

Macromolecule Entities
Molecule Chains Length Organism Details
Conserved domain protein A, B 400 Shewanella oneidensis Gene Name(s): kynA SO_4414
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.217
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 138.85 α = 90.00
b = 68.70 β = 90.00
c = 87.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-14
  • Released Date: 2006-12-19
  • Deposition author(s): Forouhar, F., Anderson, J.L.R., Mowat, C.G., Hussain, A., Seetharaman, J., Bruckmann, C., Thackray, S.J., Khan, N., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Ma, L.C., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Champman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History

  • Version 1_0: 2006-12-19

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Source and taxonomy, Version format compliance