Structure of the human RNA exosome composed of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, and Rrp40
2NN6
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/transferase
    Structure Weight: 272667.30
    Molecule: Polymyositis/scleroderma autoantigen 1
    Polymer: 1 Type: protein Length: 358
    Chains: A
    Organism: Homo sapiens
    Gene Names: PMSCL1 Gene View for EXOSC9
    UniProtKB: Search PDB | Q06265   Protein Feature View
    Molecule: Exosome complex exonuclease RRP41
    Polymer: 2 Type: protein Length: 249
    Chains: B
    EC#: 3.1.13   
    Organism: Homo sapiens
    Gene Names: RRP41 SKI6 Gene View for EXOSC4
    UniProtKB: Search PDB | Q9NPD3   Protein Feature View
    Molecule: Exosome complex exonuclease RRP43
    Polymer: 3 Type: protein Length: 278
    Chains: C
    EC#: 3.1.13   
    Organism: Homo sapiens
    Gene Names: OIP2 RRP43 Gene View for EXOSC8
    UniProtKB: Search PDB | Q96B26   Protein Feature View
    Molecule: Exosome complex exonuclease RRP46
    Polymer: 4 Type: protein Length: 237
    Chains: D
    EC#: 3.1.13   
    Organism: Homo sapiens
    Gene Names: CML28 RRP46 Gene View for EXOSC5
    UniProtKB: Search PDB | Q9NQT4   Protein Feature View
    Molecule: Exosome complex exonuclease RRP42
    Polymer: 5 Type: protein Length: 305
    Chains: E
    EC#: 3.1.13   
    Mutation: L274V
    Organism: Homo sapiens
    Gene Names: KIAA0116 RRP42 Gene View for EXOSC7
    UniProtKB: Search PDB | Q15024   Protein Feature View
    Molecule: Exosome component 6
    Polymer: 6 Type: protein Length: 272
    Chains: F
    Organism: Homo sapiens
    Gene Names: MTR3 Gene View for EXOSC6
    UniProtKB: Search PDB | Q5RKV6   Protein Feature View
    Molecule: Exosome complex exonuclease RRP40
    Polymer: 7 Type: protein Length: 289
    Chains: G
    EC#: 3.1.13   
    Organism: Homo sapiens
    Gene Names: RRP40 CGI-102 Gene View for EXOSC3
    UniProtKB: Search PDB | Q9NQT5   Protein Feature View
    Molecule: Exosome complex exonuclease RRP4
    Polymer: 8 Type: protein Length: 308
    Chains: H
    EC#: 3.1.13   
    Organism: Homo sapiens
    Gene Names: RRP4 Gene View for EXOSC2
    UniProtKB: Search PDB | Q13868   Protein Feature View
    Molecule: 3'-5' exoribonuclease CSL4 homolog
    Polymer: 9 Type: protein Length: 209
    Chains: I
    EC#: 3.1.13   
    Organism: Homo sapiens
    Gene Names: CSL4 CGI-108 Gene View for EXOSC1
    UniProtKB: Search PDB | Q9Y3B2   Protein Feature View
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 6
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 7
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 8
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 9
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UNK
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    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Lima, C.D.

    Deposition:   2006-10-23
    Release:   2006-12-26
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.35
    R-Value: 0.291 (obs.)
    R-Free: 0.344
    Space Group: P 4 3 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 307.80 α = 90.00 
    b = 307.80 β = 90.00 
    c = 307.80 γ = 90.00