2N63

Structure of C4VG16KRKP

• PDB DOI: https://doi.org/10.2210/pdb2N63/pdb
• BMRB: 25749

• Classification: DE NOVO PROTEIN, ANTIMICROBIAL PROTEIN
• Organism(s): synthetic construct
• Mutation(s): No 


• Deposited: 2015-08-11 Released: 2016-03-23 
• Deposition Author(s): Bhunia, A., Datta, A.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Designing potent antimicrobial peptides by disulphide linked dimerization and N-terminal lipidation to increase antimicrobial activity and membrane perturbation: Structural insights into lipopolysaccharide binding.

Datta, A., Kundu, P., Bhunia, A.

(2016) J Colloid Interface Sci 461: 335-345

• PubMed: 26407061 
• DOI: https://doi.org/10.1016/j.jcis.2015.09.036
• Primary Citation of Related Structures:  
  2N63, 2N65


• PubMed Abstract: 
  

  The remarkable rise in multi-drug resistant Gram-negative bacterial pathogens is a major concern to the well being of humans as well as susceptible plants. In recent years, diseases associated with inflammation and septicemia have already become a global health issue. Therefore, there is a rising demand for the development of novel "super" antibiotics. In this context, antimicrobial peptides offer an attractive, alternate therapeutic solution to conventional antibiotics.

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Organizational Affiliation: 

Department of Biophysics, Bose Institute, P-1/12 CIT Scheme VII (M), Kolkata 700 054, India.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 1.87 kDa 
• Atom Count: 129 
• Modelled Residue Count: 16 
• Deposited Residue Count: 16 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
antimicrobial peptide C4VG16KRKP	A	16	synthetic construct	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
LEA	B [auth A]	PENTANOIC ACID C5 H10 O2 NQPDZGIKBAWPEJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-03-23 
Deposition Author(s): Bhunia, A., Datta, A.

Revision History  

• Version 1.0: 2016-03-23
  Type: Initial release
  
• Version 2.0: 2024-01-24
  Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Polymer sequence, Source and taxonomy, Structure summary