2J6M

CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AEE788

Structural Biology Knowledgebase: 2J6M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2J6M

Classification: TRANSFERASE

Total Structure Weight: 37744.99

Macromolecule Entities
Molecule Chains Length Organism Details
EPIDERMAL GROWTH FACTOR RECEPTOR A 327 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 696-1022
Details: EGFR 696-1022 WILD-TYPE
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AEE
Query on AEE

A 6-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]PHENYL}- N-[(1R)-1-PHENYLETHYL]-7H-PYRROLO[2,3-D]PYRIMIDIN- 4-AMINE
C27 H32 N6
OONFNUWBHFSNBT-HXUWFJFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AEE IC50: 2 nM (100) BindingDB
Kd: 1.1 - 27.6 nM (99 - 100) BindingDB

N/A in BindingMoad
Kd: 10.9 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.199
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 145.31 α = 90.00
b = 145.31 β = 90.00
c = 145.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-29
  • Released Date: 2007-04-03
  • Deposition author(s): Yun, C.-H., Boggon, T.J., Li, Y., Woo, S., Greulich, H., Meyerson, M., Eck, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4