2J18
Chloroperoxidase mixture of ferric and ferrous states (low dose data set)
- PDB DOI: https://doi.org/10.2210/pdb2J18/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Leptoxyphium fumago
- Expression System: Leptoxyphium fumago
- Mutation(s): No 
- Deposited: 2006-08-09 Released: 2006-12-18 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.206 
- R-Value Work: 0.174 
- R-Value Observed: 0.175 
This is version 3.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
CHLOROPEROXIDASE | 299 | Leptoxyphium fumago | Mutation(s): 0  EC: 1.11.1.10 | ![]() | |
UniProt | |||||
Find proteins for P04963 (Leptoxyphium fumago) Explore P04963  Go to UniProtKB:  P04963 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04963 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 3 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G62182OO GlyCosmos:  G62182OO GlyGen:  G62182OO |
Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | F [auth A] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
NAG Query on NAG | G [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
MAN Query on MAN | H [auth A] I [auth A] J [auth A] K [auth A] L [auth A] | alpha-D-mannopyranose C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | |||
BR Query on BR | Q [auth A], R [auth A], S [auth A] | BROMIDE ION Br CPELXLSAUQHCOX-UHFFFAOYSA-M | |||
MN Query on MN | E [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
PCA Query on PCA | A | L-PEPTIDE LINKING | C5 H7 N O3 | GLN |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 4 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900111 Query on PRD_900111 | D | 2alpha-alpha-mannobiose | Oligosaccharide / Metabolism |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.206 
- R-Value Work: 0.174 
- R-Value Observed: 0.175 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.73 | α = 90 |
b = 150.46 | β = 90 |
c = 100.75 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
Entry History 
Deposition Data
- Released Date: 2006-12-18  Deposition Author(s): Beitlich, T., Kuhnel, K., Schulze-Briese, C., Shoeman, R.L., Schlichting, I.
Revision History (Full details and data files)
- Version 1.0: 2006-12-18
Type: Initial release - Version 1.1: 2011-05-08
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-03-11
Changes: Advisory, Data collection, Derived calculations, Other, Polymer sequence - Version 3.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary - Version 3.1: 2023-12-13
Changes: Data collection, Database references, Refinement description, Structure summary