COMPLEX BETWEEN THE PRYSPRY DOMAIN OF TRIM21 AND IGG FC
2IWG
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immunoglobulin Domain
    Structure Weight: 91149.06
    Molecule: IG GAMMA-1 CHAIN C
    Polymer: 1 Type: protein Length: 207
    Chains: A, D
    Fragment: RESIDUES 120-326
    Organism: Homo sapiens
    Gene Name: IGHG1
    UniProtKB: Protein Feature View | Search PDB | P01857  
    Molecule: 52 KDA RO PROTEIN
    Polymer: 2 Type: protein Length: 181
    Chains: B, E
    EC#: 6.3.2   
    Fragment: RESIDUES 287-465
    Organism: Homo sapiens
    Gene Names: Gene View for TRIM21 RNF81 RO52 SSA1
    UniProtKB: Protein Feature View | Search PDB | P19474  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1AJ7   IMMUNOGLOBULIN 48G7 GERMLINE FAB ANTIBODY COMPLEXED WITH HAPTEN 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID. AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY 
    1AQK   THREE-DIMENSIONAL STRUCTURE OF A HUMAN FAB WITH HIGH AFFINITY FOR TETANUS TOXOID 
    1D5B   UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY 
    1D5I   UNLIGANDED GERMLINE PRECURSOR OF AN OXY-COPE CATALYTIC ANTIBODY 
    1D6V   CONFORMATION EFFECTS IN BIOLOGICAL CATALYSIS INTRODUCED BY OXY-COPE ANTIBODY MATURATION 
    1DN2   FC FRAGMENT OF HUMAN IGG1 IN COMPLEX WITH AN ENGINEERED 13 RESIDUE PEPTIDE DCAWHLGELVWCT-NH2 
    1E4K   CRYSTAL STRUCTURE OF SOLUBLE HUMAN IGG1 FC FRAGMENT-FC-GAMMA RECEPTOR III COMPLEX 
    1FC1   FC FRAGMENT (IGG1 CLASS) 
    1FC2    
    1FCC    
    1H3T   STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY 
    1H3U   STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY 
    1H3V   STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY 
    1H3W   STRUCTURAL ANALYSIS OF HUMAN IGG-FC GLYCOFORMS REVEALS A CORRELATION BETWEEN GLYCOSYLATION AND STRUCTURAL INTEGRITY 
    1H3Y   CRYSTAL STRUCTURE OF A HUMAN IGG1 FC- FRAGMENT,HIGH SALTCONDITION 
    1HZH   CRYSTAL STRUCTURE OF THE INTACT HUMAN IGG B12 WITH BROADAND POTENT ACTIVITY AGAINST PRIMARY HIV-1 ISOLATES: ATEMPLATE FOR HIV VACCINE DESIGN 
    1I7Z   ANTIBODY GNC92H2 BOUND TO LIGAND 
    1IIS   CRYSTAL STRUCTURE OF A HUMAN FCG RECEPTOR IN COMPLEX WITHAN FC FRAGMENT OF IGG1 ( ORTHORHOMBIC) 
    1IIX   CRYSTAL STRUCTURE OF A HUMAN FCG RECEPTOR IN COMPLEX WITHAN FC FRAGMENT OF IGG1 ( HEXAGONAL) 
    1L6X   FC FRAGMENT OF RITUXIMAB BOUND TO A MINIMIZED VERSION OFTHE B-DOMAIN FROM PROTEIN A CALLED Z34C 
    1N7M   GERMLINE 7G12 WITH N-METHYLMESOPORPHYRIN 
    1OQX   G-2 GLYCOVARIANT OF HUMAN IGG FC BOUND TO MINIMIZED VERSIONOF PROTEIN A CALLED Z34C 
    1T83   CRYSTAL STRUCTURE OF A HUMAN TYPE III FC GAMMA RECEPTOR INCOMPLEX WITH AN FC FRAGMENT OF IGG1 (ORTHORHOMBIC) 
    2RCS   IMMUNOGLOBULIN 48G7 GERMLINE FAB - AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    FU4
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    FU4 C6 H12 O4
    2,6-ANHYDRO-1-DEOXY-D-GALACTITOL
    GAL
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    GAL C6 H12 O6
    BETA-D-GALACTOSE
    GAL:2IWG
    MAN
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    MAN C6 H12 O6
    ALPHA-D-MANNOSE
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   James, L.C.,  Keeble, A.H.,  Rhodes, D.A.,  Trowsdale, J.

    Deposition:   2006-06-30
    Release:   2007-03-27
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.35
    R-Value: 0.217 (obs.)
    R-Free: 0.253
    Space Group: P 61
    Unit Cell:
      Length [Å] Angles [°]
    a = 112.49 α = 90.00 
    b = 112.49 β = 90.00 
    c = 194.61 γ = 120.00