2IBD

Crystal structure of Probable transcriptional regulatory protein RHA5900

Structural Biology Knowledgebase: 2IBD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 2IBD

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 45458.59

Macromolecule Entities
Molecule Chains Length Organism Details
Possible transcriptional regulator A, B 204 Rhodococcus jostii Mutation: M1M, M61M, M140M
Gene Name(s): kstR2 RHA1_ro04598
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.168
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.59 α = 90.00
b = 118.78 β = 90.00
c = 97.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-11
  • Released Date: 2006-10-10
  • Deposition author(s): Chang, C., Evdokimova, E., Kagan, O., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4