2I5R

Structure of small Toprim domain-containing protein from B. stearothermophilus in complex with Mg2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 2I5R

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 42961.50

Macromolecule Entities
Molecule Chains Length Organism Details
Toprim domain-containing protein A, B, C 122 Geobacillus stearothermophilus Gene Name(s): GK3002
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

C 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.171
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.67 α = 90.00
b = 73.03 β = 90.00
c = 114.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-08-25
  • Released Date: 2007-07-03
  • Deposition author(s): Rezacova, P., Borek, D., Otwinowski, Z., Joachimiak, A., Moy, S.F., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2007-10-11
    Type: Version format compliance
  • 2011-07-13
    Type: Advisory, Version format compliance