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Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.
 
 
DOI:10.2210/pdb2i2t/pdb   NDB ID: RR0150
2I2T
 
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
2I2P   2I2T   2I2U   2I2V  
Download All Files   
 
 
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1358814.50
     
    Molecule:5S ribosomal RNA
    Polymer:1Type:polyribonucleotideLength:120
    Chains:A
    Molecule:23S ribosomal RNA
    Polymer:2Type:polyribonucleotideLength:2904
    Chains:B
    Molecule:50S ribosomal protein L2
    Polymer:3Type:polypeptide(L)Length:272
    Chains:C
    Molecule:50S ribosomal protein L3
    Polymer:4Type:polypeptide(L)Length:209
    Chains:D
    Molecule:50S ribosomal protein L4
    Polymer:5Type:polypeptide(L)Length:201
    Chains:E
    Molecule:50S ribosomal protein L5
    Polymer:6Type:polypeptide(L)Length:178
    Chains:F
    Molecule:50S ribosomal protein L6
    Polymer:7Type:polypeptide(L)Length:176
    Chains:G
    Molecule:50S ribosomal protein L9
    Polymer:8Type:polypeptide(L)Length:149
    Chains:H
    Molecule:50S ribosomal protein L11
    Polymer:9Type:polypeptide(L)Length:141
    Chains:I
    Molecule:50S ribosomal protein L13
    Polymer:10Type:polypeptide(L)Length:142
    Chains:J
    Molecule:50S ribosomal protein L14
    Polymer:11Type:polypeptide(L)Length:123
    Chains:K
    Molecule:50S ribosomal protein L15
    Polymer:12Type:polypeptide(L)Length:144
    Chains:L
    Molecule:50S ribosomal protein L16
    Polymer:13Type:polypeptide(L)Length:136
    Chains:M
    Molecule:50S ribosomal protein L17
    Polymer:14Type:polypeptide(L)Length:127
    Chains:N
    Molecule:50S ribosomal protein L18
    Polymer:15Type:polypeptide(L)Length:117
    Chains:O
    Molecule:50S ribosomal protein L19
    Polymer:16Type:polypeptide(L)Length:114
    Chains:P
    Molecule:50S ribosomal protein L20
    Polymer:17Type:polypeptide(L)Length:117
    Chains:Q
    Molecule:50S ribosomal protein L21
    Polymer:18Type:polypeptide(L)Length:103
    Chains:R
    Molecule:50S ribosomal protein L22
    Polymer:19Type:polypeptide(L)Length:110
    Chains:S
    Molecule:50S ribosomal protein L23
    Polymer:20Type:polypeptide(L)Length:100
    Chains:T
    Molecule:50S ribosomal protein L24
    Polymer:21Type:polypeptide(L)Length:103
    Chains:U
    Molecule:50S ribosomal protein L25
    Polymer:22Type:polypeptide(L)Length:94
    Chains:V
    Molecule:50S ribosomal protein L27
    Polymer:23Type:polypeptide(L)Length:84
    Chains:W
    Molecule:50S ribosomal protein L28
    Polymer:24Type:polypeptide(L)Length:77
    Chains:X
    Molecule:50S ribosomal protein L29
    Polymer:25Type:polypeptide(L)Length:63
    Chains:Y
    Molecule:50S ribosomal protein L30
    Polymer:26Type:polypeptide(L)Length:58
    Chains:Z
    Molecule:50S ribosomal protein L32
    Polymer:27Type:polypeptide(L)Length:56
    Chains:0
    Molecule:50S ribosomal protein L33
    Polymer:28Type:polypeptide(L)Length:54
    Chains:1
    Molecule:50S ribosomal protein L34
    Polymer:29Type:polypeptide(L)Length:46
    Chains:2
    Molecule:50S ribosomal protein L35
    Polymer:30Type:polypeptide(L)Length:64
    Chains:3
    Molecule:50S ribosomal protein L36
    Polymer:31Type:polypeptide(L)Length:38
    Chains:4
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 4
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 5
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 6
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 7
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 8
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 9
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 10
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 11
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 12
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 13
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 14
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 15
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 16
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 17
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 18
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 19
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 20
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 21
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 22
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 23
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 24
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 25
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 26
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 27
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 28
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 29
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 30
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
    Polymer: 31
    Scientific Name: Escherichia coli Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    2I2P  30s subunit of 70s ribosome one 
    2I2U  30s subunit of 70s ribosome two 
    2I2V  50s subunit of 70s ribosome two 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
    ZN     ZINC ION Zn 3DLigand Explorer Link out to Ligand Expos:ZN Link out to SuperLigands:ZN Link out to SuperHapten:ZN
     
     
  •  
    Move Section Derived Data Hide
     
     
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< Biological Assembly 1    Help >
View in Jmol
Composite of PDB entries (2I2P and 2I2T)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Berk, V.,   Zhang, W.,   Pai, R.D.,   Cate, J.H.D.

    Deposition:   2006-08-16
    Release:   2006-10-24
    Last Modified (REVDAT):   2009-04-28
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors
    View a histogram of Resolution Resolution[Å]: 3.22
    R-Value: 0.287 (work)
    R-Free: 0.320
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 211.78 α = 90.00 
    b = 395.22 β = 90.00 
    c = 744.38 γ = 90.00