2HVQ

Structure of Adenylated full-length T4 RNA Ligase 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 2HVQ

Classification: LIGASE

Total Structure Weight: 38074.97

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical 37.6 kDa protein in Gp24-hoc intergenic region A 335 Enterobacteria phage t4 sensu lato EC#: 6.5.1.3 IUBMB
Mutation: K35X, C112G
Gene Name(s): Y10A 24.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
APK
Query on APK
A L-PEPTIDE LINKING C16 H26 N7 O7 P LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.211
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.02 α = 90.00
b = 57.85 β = 90.00
c = 119.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-07-30
  • Released Date: 2006-10-17
  • Deposition author(s): Nandakumar, J., Lima, C.D.

Revision History

  • Version 1_0: 2006-10-17

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description