2GLZ

Crystal structure of a formylmethanofuran dehydrogenase subunit e-like protein (dhaf_2992) from desulfitobacterium hafniense dcb-2 at 1.45 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 2GLZ

Classification: METAL BINDING PROTEIN

Total Structure Weight: 36520.70

Macromolecule Entities
Molecule Chains Length Organism Details
similar to Formylmethanofuran dehydrogenase subunit E A, B 153 Desulfitobacterium hafniense Mutation: M1M, M36M, M82M
Gene Name(s): Dhaf_2992
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 46.42 α = 90.00
b = 84.79 β = 90.00
c = 100.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-05
  • Released Date: 2006-04-18
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • Version 1_0: 2006-04-18

    Type: Initial release

  • Version 1_1: 2008-01-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Derived calculations, Source and taxonomy, Version format compliance

  • Version 1_3: 2012-10-24

    Type: Database references