2GB8

Solution structure of the complex between yeast iso-1-cytochrome c and yeast cytochrome c peroxidase


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 2GB8

Classification: OXIDOREDUCTASE / ELECTRON TRANSPORT

Total Structure Weight: 46834.08

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c peroxidase A 294 Saccharomyces cerevisiae EC#: 1.11.1.5 IUBMB
Fragment: cytochrome c peroxidase
Mutation: T53I, D152G
Gene Name(s): CCP1 CCP CPO Gene View YKR066C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Cytochrome c iso-1 B 108 Saccharomyces cerevisiae Gene Name(s): CYC1 Gene View YJR048W J1653
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEC
Query on HEC

B HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-10
  • Released Date: 2006-11-21
  • Deposition author(s): Volkov, A.N., Worrall, J.A.R., Ubbink, M.

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance