2FGQ
High resolution X-ray structure of Omp32 in complex with malate
- PDB DOI: https://doi.org/10.2210/pdb2FGQ/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Delftia acidovorans
- Mutation(s): No
- Membrane Protein: Yes OPMPDBTMMemProtMD
- Deposited: 2005-12-22 Released: 2006-01-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.171
- R-Value Work: 0.149
- R-Value Observed: 0.149
This is version 1.4 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane porin protein 32 | A [auth X] | 332 | Delftia acidovorans | Mutation(s): 0 Membrane Entity: Yes |  |
UniProt | |||||
Find proteins for P24305 (Delftia acidovorans) Explore P24305 Go to UniProtKB: P24305 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24305 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BOG Query on BOG | B [auth X] | octyl beta-D-glucopyranoside C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N |  | ||
| MLT Query on MLT | H [auth X] | D-MALATE C4 H6 O5 BJEPYKJPYRNKOW-UWTATZPHSA-N |  | ||
| SO4 Query on SO4 | F [auth X], G [auth X] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CA Query on CA | C [auth X], D [auth X], E [auth X] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.171
- R-Value Work: 0.149
- R-Value Observed: 0.149
- Space Group: P 63
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 106.21 | α = 90 |
| b = 106.21 | β = 90 |
| c = 93.21 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XDS | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-01-31 Deposition Author(s): Zeth, K., Engelhardt, H.
Revision History (Full details and data files)
- Version 1.0: 2006-01-31
Type: Initial release - Version 1.1: 2008-04-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Derived calculations, Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references, Structure summary
