2FDS

Crystal Structure of Plasmodium Berghei Orotidine 5'-monophosphate Decarboxylase (ortholog of Plasmodium falciparum PF10_0225)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 2FDS

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 82299.41

Macromolecule Entities
Molecule Chains Length Organism Details
orotidine-monophosphate-decarboxylase A, B 352 Plasmodium berghei Gene Name(s): PB000897.00.0 PBANKA_050740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 44.20 α = 90.00
b = 108.62 β = 97.30
c = 69.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-14
  • Released Date: 2005-12-20
  • Deposition author(s): Qiu, W., Dong, A., Wasney, G., Vedadi, M., Lew, J., Kozieradski, I., Alam, Z., Melone, M., Weigelt, J., Sundstrom, M., Edwards, A., Arrowsmith, C., Hui, R., Gao, M., Bochkarev, A., Artz, J.D., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4