Asite RNA + designer antibiotic
DOI:10.2210/pdb2f4u/pdb   NDB ID: DR0029
2F4U
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 14010.85
    Molecule: 5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'
    Polymer: 1 Type: rna Length: 21
    Chains: A, B
    Details: A-site RNA
     
  •   Structure Validation Hide

    View the full validation report  

     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2F4S    
    2F4T    
    2F4V    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AB6
    Search 
    Download 
    AB6 C21 H44 N6 O9
    (2R)-4-AMINO-N-((1R,2S,3R,4R,5S)-5-AMINO- 4-[(2-AMINO-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]- 2-{2-[(3-AMINOPROPYL)AMINO]ETHOXY}-3-HYDROXYCYCLOHEXYL)- 2-HYDROXYBUTANAMIDE
    AB6:2F4U
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    AB6
    Search 
    Download 
    AB6
    N/Ain BindingDB
    N/Ain BindingMoad
    Kd: 5900 nM - data from PDBbind  
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:DR0029
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Murray, J.B.,  Meroueh, S.O.,  Russell, R.J.,  Lentzen, G.,  Haddad, J.,  Mobashery, S.

    Deposition:   2005-11-24
    Release:   2006-05-02
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.60
    R-Value: 0.299 (obs.)
    R-Free: 0.299
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 33.10 α = 90.00 
    b = 46.46 β = 90.00 
    c = 89.50 γ = 90.00