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Structure of a Ndt80-DNA complex (MSE mutant mA7G)
DOI:10.2210/pdb2evh/pdb   NDB ID: PD0734
2EVH
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Cell Cycle/dna
    Structure Weight: 48151.56
    Molecule: 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*GP*AP*AP*AP*C)-3'
    Polymer: 1 Type: dna Length: 14
    Chains: B
    Details: MUTANT MSE DNA STRAND 1
    Molecule: 5'-D(*AP*GP*TP*TP*TP*CP*TP*GP*TP*GP*TP*CP*GP*C)-3'
    Polymer: 2 Type: dna Length: 14
    Chains: C
    Details: MUTANT MSE DNA STRAND 2
    Molecule: NDT80 protein
    Polymer: 3 Type: protein Length: 345
    Chains: A
    Fragment: NDT80 DNA BINDING DOMAIN
    Mutation: s146g, i200t
    Organism: Saccharomyces cerevisiae
    Gene Names: NDT80 DAS1 YHR124W
    UniProtKB: Protein Feature View | Search PDB | P38830  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli bl21  
     
  •   Related PDB Entries Hide
    Identifier Details
    1M6U   
    1M7U   
    1MN4   
    1MNN   
    2EHI   
    2EHJ   
    2ETW   
    2EUV   
    2EUW   
    2EUX   
    2EUZ   
    2EVF   
    2EVG   
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0734
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Lamoureux, J.S.,  Glover, J.N.

    Deposition:   2005-10-31
    Release:   2006-03-21
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.99
    R-Value: 0.180 (obs.)
    R-Free: 0.212
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 69.53 α = 90.00 
    b = 78.44 β = 90.00 
    c = 161.33 γ = 90.00