Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes
DOI:10.2210/pdb2etw/pdb   NDB ID: PD0727
2ETW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Cell Cycle/dna
    Structure Weight: 48150.58
    Molecule: 5'-D(*TP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*AP*AP*C)-3'
    Polymer: 1 Type: dna Length: 14
    Chains: B
    Details: vG1C MSE DNA strand 1
    Molecule: 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*TP*GP*TP*GP*GP*C)-3'
    Polymer: 2 Type: dna Length: 14
    Chains: C
    Details: vG1C MSE DNA strand 2
    Molecule: NDT80 protein
    Polymer: 3 Type: protein Length: 345
    Chains: A
    Fragment: Ndt80 DNA-binding Domain
    Organism: Saccharomyces cerevisiae
    Gene Names: NDT80 DAS1 YHR124W
    UniProtKB: Search PDB | P38830   Protein Feature View
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Baker's yeast Expression System: Escherichia coli bl21  
     
  •   Related PDB Entries Hide
    Identifier Details
    1M6U   Structure of Ndt80 core DNA binding domain 
    1M7U   Structure of Ndt80 core DNA binding domain 
    1MN4   Structure of Ndt80 core DNA binding domain 
    1MNN   Structure of a wilttype complex of Ndt80 - MSE 
    2EHI    
    2EHJ    
    2EUV    
    2EUW    
    2EUX    
    2EUZ    
    2EVF    
    2EVG    
    2EVH    
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0727
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Lamoureux, J.S.,  Glover, J.N.

    Deposition:   2005-10-27
    Release:   2006-03-21
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.67
    R-Value: 0.181 (obs.)
    R-Free: 0.199
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 70.30 α = 90.00 
    b = 78.92 β = 90.00 
    c = 161.63 γ = 90.00