2E12

The crystal structure of XC5848 from Xanthomonas campestris adopting a novel variant of Sm-like motif

PDB DOI: https://doi.org/10.2210/pdb2E12/pdb

Classification: TRANSLATION
Organism(s): Xanthomonas campestris pv. campestris
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-10-17 Released: 2007-10-30
Deposition Author(s): Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.280
R-Value Work: 0.220
R-Value Observed: 0.240

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

XC5848, an ORFan protein from Xanthomonas campestris, adopts a novel variant of Sm-like motif

Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.

(2007) Proteins 68: 1006-1010

PubMed: 17546661 Search on PubMed
DOI: https://doi.org/10.1002/prot.21375
Primary Citation of Related Structures:
2E12

Organizational Affiliation

Institute of Biochemistry, National Chung-Hsing University, Taichung, 40227, Taiwan, Republic of China.

Macromolecule Content

Total Structure Weight: 23.14 kDa
Atom Count: 1,634
Modelled Residue Count: 186
Deposited Residue Count: 202
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein XCC3642	A, B	101	Xanthomonas campestris pv. campestris	Mutation(s): 0
UniProt
Find proteins for Q8P4R5 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P4R5 Go to UniProtKB: Q8P4R5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8P4R5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.280
R-Value Work: 0.220
R-Value Observed: 0.240
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.942	α = 90
b = 51.699	β = 90
c = 82.12	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
AMoRE	phasing
CNS	refinement
DENZO	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-10-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-10-30
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2019-11-06
Changes: Data collection
Version 1.3: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.