2D8P

Structure of HYPER-VIL-thaumatin

Structural Biology Knowledgebase: 2D8P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2D8P

Classification: UNKNOWN FUNCTION

Total Structure Weight: 23994.72

Macromolecule Entities
Molecule Chains Length Organism Details
Thaumatin I A 207 Thaumatococcus daniellii Mutation: Y11X, Y57X, Y95X, Y99X, Y169X
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
TYI
Query on TYI
A L-PEPTIDE LINKING C9 H9 I2 N O3 TYR
IYR
Query on IYR
A L-PEPTIDE LINKING C9 H10 I N O3 TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.214
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.73 α = 90.00
b = 57.73 β = 90.00
c = 150.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-12-08
  • Released Date: 2006-07-11
  • Deposition author(s): Miyatake, H., Hasegawa, T., Yamano, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4