2D00

Subunit F of V-type ATPase/synthase

Structural Biology Knowledgebase: 2D00 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 2D00

Classification: HYDROLASE

Total Structure Weight: 71432.94

Macromolecule Entities
Molecule Chains Length Organism Details
V-type ATP synthase subunit F A, B, C..., D, E, FA, B, C, D, E, F 109 Thermus thermophilus EC#: 3.6.3.14 IUBMB
Gene Name(s): atpF vatF TTHA1274
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.214
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 81.71 α = 90.00
b = 138.29 β = 90.00
c = 66.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-21
  • Released Date: 2005-12-06
  • Deposition author(s): Makyio, H., Iino, R., Ikeda, C., Imamura, H., Tamakoshi, M., Iwata, M., Stock, D., Bernal, R.A., Carpenter, E.P., Yoshida, M., Yokoyama, K., Iwata, S.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4