2CME

The crystal structure of SARS coronavirus ORF-9b protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.266

Literature

Macromolecules
Sequence Display for 2CME

Classification: HYPOTHETICAL PROTEIN

Total Structure Weight: 68631.35

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOTHETICAL PROTEIN 5 A 78 Sars-related coronavirus Mutation: Q52N
Gene Name(s): 9b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HYPOTHETICAL PROTEIN 5 B 79 Sars-related coronavirus Mutation: Q52N
Details: CONTAINS LIPID MOLECULE (MODELLED AS DECANE, RESIDUE NAME D10)
Gene Name(s): ORF9b sars9b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HYPOTHETICAL PROTEIN 5 C, D, F, H 76 Sars-related coronavirus Mutation: Q52N
Details: CONTAINS LIPID MOLECULE (MODELLED AS DECANE, RESIDUE NAME D10)
Gene Name(s): 9b
HYPOTHETICAL PROTEIN 5 E, G 77 Sars-related coronavirus Mutation: Q52N
Gene Name(s): ORF9b sars9b

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D10
Query on D10

B, C, F, H DECANE
C10 H22
DIOQZVSQGTUSAI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.266
  • Space Group: P 42

Unit Cell:

Length (Å) Angle (°)
a = 140.03 α = 90.00
b = 140.03 β = 90.00
c = 45.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-05-06
  • Released Date: 2006-07-19
  • Deposition author(s): Meier, C., Aricescu, A.R., Assenberg, R., Aplin, R.T., Gilbert, R.J.C., Grimes, J.M., Stuart, D.I.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance