2CFR

crystal structure of human pyridoxal 5'-phosphate phosphatase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 2CFR

Classification: HYDROLASE

Total Structure Weight: 32078.16

Macromolecule Entities
Molecule Chains Length Organism Details
PYRIDOXAL PHOSPHATE PHOSPHATASE A 298 Homo sapiens EC#: 3.1.3.3 IUBMB 3.1.3.74 IUBMB
Gene Name(s): PDXP Gene View CIN PLP PLPP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.203
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 54.30 α = 90.00
b = 54.30 β = 90.00
c = 213.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-23
  • Released Date: 2007-02-27
  • Deposition author(s): Kang, B.S., Cho, H.J., Kim, K.J., Kwon, O.S.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance