2CB8

High resolution crystal structure of liganded human L-ACBP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 2CB8

Classification: TRANSPORT

Total Structure Weight: 24729.87

Macromolecule Entities
Molecule Chains Length Organism Details
ACYL-COA-BINDING PROTEIN A, B 87 Homo sapiens Gene Name(s): DBI Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MYA
Query on MYA

A, B TETRADECANOYL-COA
MYRISTOYL-COA (Synonym)
C35 H62 N7 O17 P3 S
DUAFKXOFBZQTQE-GLTUGWJXDB
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MXE
Query on MXE

B 2-METHOXYETHANOL
C3 H8 O2
XNWFRZJHXBZDAG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MYA N/A in BindingDB
Kd: 2.5 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.171
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 118.49 α = 90.00
b = 118.49 β = 90.00
c = 118.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-03
  • Released Date: 2006-10-25
  • Deposition author(s): Taskinen, J.P., van Aalten, D.M., Knudsen, J., Wierenga, R.K.

Revision History

  • Version 1_0: 2006-10-25

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance