2B8V

Crystal structure of human Beta-secretase complexed with L-L000430,469

Structural Biology Knowledgebase: 2B8V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.358
  • R-Value Work: 0.346

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2B8V

Classification: HYDROLASE

Total Structure Weight: 45658.86

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A 405 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: PROTEASE DOMAIN
Mutation: K75A, E77A
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3BN
Query on 3BN

A 3-BENZOYL-N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)- 2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]BENZAMIDE
C29 H33 N3 O5 S
WCVRLSCSQDAERN-RRPNLBNLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3BN IC50: 98 nM (100) BindingDB

IC50: 98 nM  BindingMOAD
IC50: 98 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.358
  • R-Value Work: 0.346
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 104.90 α = 90.00
b = 127.40 β = 90.00
c = 76.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-10
  • Released Date: 2005-12-06
  • Deposition author(s): Stachel, S.J., Coburn, C.A., Steele, T.G., Crouthamel, M.-C., Pietrak, B.L., Lai, M.-T., Holloway, M.K., Munshi, S.K., Graham, S.L., Vacca, J.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4