253D

CRYSTAL STRUCTURE OF THE B-DNA NONAMER D(GCGTACGCG) WITH A NOVEL D[G*(G.C)] BASE-TRIPLET INVOLVING THE MINOR GROOVE

Structural Biology Knowledgebase: 253D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 253D

Classification: DNA

Total Structure Weight: 2781.14

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*CP*G)-3') A 9 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.193
  • Space Group: P 42 21 2

Unit Cell:

Length (Å) Angle (°)
a = 38.92 α = 90.00
b = 38.92 β = 90.00
c = 33.03 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1996-03-20
  • Released Date: 1996-04-15
  • Deposition author(s): Mooers, B.H.M., Ho, P.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4