1ZLA

X-ray Structure of a Kaposi's sarcoma herpesvirus LANA peptide bound to the nucleosomal core

Structural Biology Knowledgebase: 1ZLA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.222

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1ZLA

Classification: PROTEIN BINDING / VIRUS / DNA

Total Structure Weight: 201531.26


Macromolecule Entities
Molecule Chains Length Organism Details
histone H3 A, E 135 Xenopus laevis Mutation: G511A, T518H
Gene Name(s):
Histone H4 B, F 102 Xenopus laevis Gene Name(s):
Xenopus laevis-like histone H2A C, G 129 Expression vector pet3-h2a Mutation: A869W, A870E, A926T
Gene Name(s):
histone H2B D, H 125 Xenopus laevis Gene Name(s):
latent nuclear antigen K 22 Human herpesvirus 8 Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
Palindromic 146bp Human alpha-Satellite DNA fragment I, J 146 Homo sapiens


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.222
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.16 α = 90.00
b = 109.60 β = 90.00
c = 182.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-05
  • Released Date: 2006-02-28
  • Deposition author(s): Chodaparambil, J.V., Barbera, A.J., Kaye, K.M., Luger, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4