1Z6T

Structure of the apoptotic protease-activating factor 1 bound to ADP

Structural Biology Knowledgebase: 1Z6T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Z6T

Classification: APOPTOSIS

Total Structure Weight: 273131.47

Macromolecule Entities
Molecule Chains Length Organism Details
Apoptotic protease activating factor 1 A, B, C, D 591 Homo sapiens Fragment: Apaf-1, residues 1-591
Gene Name(s): APAF1 Gene View KIAA0413
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C, D ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.189
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 75.96 α = 62.96
b = 92.88 β = 89.99
c = 94.99 γ = 90.05

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-23
  • Released Date: 2005-04-19
  • Deposition author(s): Riedl, S.J., Li, W., Chao, Y., Schwarzenbacher, R., Shi, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4