1Z5S

Crystal structure of a complex between UBC9, SUMO-1, RANGAP1 and NUP358/RANBP2

  • Classification: LIGASE
  • Deposited: 2005-03-19 Released: 2005-06-07
  • Deposition author(s): Reverter, D.Lima, C.D.
  • Organism: Homo sapiens
  • Expression System: Escherichia coli BL21(DE3), Escherichia coli BL21(DE3), Escherichia coli BL21(DE3), Escherichia coli BL21(DE3)

Structural Biology Knowledgebase: 1Z5S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.247

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Z5S

Classification: LIGASE

Total Structure Weight: 55736.38

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 I A 158 Homo sapiens Gene Name(s): UBE2I Gene View UBC9 UBCE9
Ubiquitin-like protein SMT3C B 82 Homo sapiens Gene Name(s): SUMO1 Gene View SMT3C SMT3H3 UBL1 OK/SW-cl.43
Ran GTPase-activating protein 1 C 172 Homo sapiens Fragment: C-terminal domain
Gene Name(s): RANGAP1 Gene View KIAA1835 SD
Ran-binding protein 2 D 83 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: IR1-M domain
Gene Name(s): RANBP2 Gene View NUP358


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.247
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.12 α = 90.00
b = 157.12 β = 90.00
c = 59.61 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-19
  • Released Date: 2005-06-07
  • Deposition author(s): Reverter, D., Lima, C.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4