1Z2Z

Crystal Structure of the Putative tRNA pseudouridine synthase D (TruD) from Methanosarcina mazei, Northeast Structural Genomics Target MaR1

Structural Biology Knowledgebase: 1Z2Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Z2Z

Classification: LYASE

Total Structure Weight: 102116.60

Macromolecule Entities
Molecule Chains Length Organism Details
Probable tRNA pseudouridine synthase D A, B 446 Methanosarcina mazei EC#: 4.2.1.70 IUBMB
Mutation: M1M, M243M, M244M, M268M, M326M, M379M, M415M, M430M, M437M
Gene Name(s): truD MM_0114

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.233
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.56 α = 90.00
b = 132.53 β = 116.98
c = 66.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-10
  • Released Date: 2005-04-26
  • Deposition author(s): Forouhar, F., Yong, W., Ciano, M., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4