1YZG

Structure of Human ADP-ribosylation factor-like 8

Structural Biology Knowledgebase: 1YZG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1YZG

Classification: TRANSPORT PROTEIN

Total Structure Weight: 20840.93

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribosylation factor-like 8 A 179 Homo sapiens Gene Name(s): ARL5B Gene View ARL8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.226
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.72 α = 90.00
b = 48.14 β = 103.45
c = 51.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-28
  • Released Date: 2005-03-22
  • Deposition author(s): Choe, J., Atanassova, A., Arrowsmith, C., Edwards, A., Sundstrom, M., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4