1YRT

Crystal Structure analysis of the adenylyl cyclaes catalytic domain of adenylyl cyclase toxin of Bordetella pertussis in presence of c-terminal calmodulin

Structural Biology Knowledgebase: 1YRT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YRT

Classification: LAYSE TOXIN

Total Structure Weight: 48057.80

Macromolecule Entities
Molecule Chains Length Organism Details
Bifunctional hemolysin-adenylate cyclase A 364 Bordetella pertussis EC#: 4.6.1.1 IUBMB
Fragment: Calmodulin-sensitive adenylate cyclase
Gene Name(s): cya cyaA BP0760
Calmodulin B 74 Homo sapiens Gene Name(s): CALM1 Gene View CALM CAM CAM1 CALM2 Gene View CAM2 CAMB CALM3 Gene View CALML2 CAM3 CAMC CAMIII

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.220
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.36 α = 90.00
b = 79.36 β = 90.00
c = 139.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-04
  • Released Date: 2006-01-17
  • Deposition author(s): Guo, Q., Shen, Y., Lee, Y.S., Gibbs, C.S., Mrksich, M., Tang, W.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4