1YQC

Crystal Structure of Ureidoglycolate Hydrolase (AllA) from Escherichia coli O157:H7

Structural Biology Knowledgebase: 1YQC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YQC

Classification: Hydrolase

Total Structure Weight: 39243.68

Macromolecule Entities
Molecule Chains Length Organism Details
Ureidoglycolate hydrolase A, B 170 Escherichia coli EC#: 3.5.1.116 IUBMB
Mutation: M1M, M84M
Gene Name(s): allA Z0659 ECs0566
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLV
Query on GLV

A GLYOXYLIC ACID
GLYOXALATE, GLYOXYLATE (Synonym)
C2 H2 O3
HHLFWLYXYJOTON-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.226
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.05 α = 90.00
b = 74.47 β = 103.89
c = 56.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-01
  • Released Date: 2005-10-18
  • Deposition author(s): Raymond, S., Tocilj, A., Matte, A., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor