1YJX

Crystal structure of human B type phosphoglycerate mutase

Structural Biology Knowledgebase: 1YJX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.233

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YJX

Classification: ISOMERASE HYDROLASE

Total Structure Weight: 361526.28

Macromolecule Entities
Molecule Chains Length Organism Details
Phosphoglycerate mutase 1 A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 262 Homo sapiens EC#: 3.1.3.13 IUBMB 5.4.2.11 IUBMB 5.4.2.4 IUBMB
Gene Name(s): PGAM1 Gene View PGAMA CDABP0006
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A, B, C, D, E, F, G, H, I, J, K, L CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, C, F, H, J, K CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.233
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 130.53 α = 90.00
b = 75.93 β = 94.42
c = 186.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-16
  • Released Date: 2005-05-17
  • Deposition author(s): Wang, Y., Wei, Z., Liu, L., Gong, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4