1YA8

Crystal Structure of Human Liver Carboxylesterase in complex with cleavage products of Mevastatin

Structural Biology Knowledgebase: 1YA8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YA8

Classification: HYDROLASE

Total Structure Weight: 179207.70

Macromolecule Entities
Molecule Chains Length Organism Details
CES1 protein A, B, C 532 Homo sapiens EC#: 3.1.1.1 IUBMB
Gene Name(s): CES1 Gene View CES2 Gene View SES1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

A, B, C O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MVB
Query on MVB

A, C (1S,7S,8S,8AR)-1,2,3,7,8,8A-HEXAHYDRO-7-METHYL- 8-[2-[(2R,4R)-TETRAHYDRO-4-HY DROXY-6-OXO- 2H-PYRAN-2-YL]ETHYL]-1-NAPHTHALENOL
C18 H26 O4
WWSNTLOVYSRDEL-TVKPWXLESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B, C N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SMB
Query on SMB

A, B, C 2-METHYLBUTANOIC ACID
C5 H10 O2
WLAMNBDJUVNPJU-BYPYZUCNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.187
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.78 α = 90.00
b = 181.59 β = 90.00
c = 202.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-12-17
  • Released Date: 2005-08-02
  • Deposition author(s): Fleming, C.D., Bencharit, S., Edwards, C.C., Hyatt, J.L., Morton, C.L., Howard-Williams, E.L., Potter, P.M., Redinbo, M.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update