1Y4S

Conformation rearrangement of heat shock protein 90 upon ADP binding

Structural Biology Knowledgebase: 1Y4S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.314
  • R-Value Work: 0.269

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1Y4S

Classification: CHAPERONE

Total Structure Weight: 128825.81

Macromolecule Entities
Molecule Chains Length Organism Details
Chaperone protein htpG A, B 559 Escherichia coli Fragment: residues 1-559
Gene Name(s): htpG b0473 JW0462

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.314
  • R-Value Work: 0.269
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.50 α = 90.00
b = 84.18 β = 90.00
c = 212.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-12-01
  • Released Date: 2005-04-19
  • Deposition author(s): Huai, Q., Wang, H., Liu, Y., Kim, H., Toft, D., Ke, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4