1XPI

Crystal structure of the catalytic domain of E. coli pseudouridine synthase RluC

Structural Biology Knowledgebase: 1XPI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1XPI

Classification: LYASE

Total Structure Weight: 52322.46

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal large subunit pseudouridine synthase C A, B 231 Escherichia coli EC#: 5.4.99.24 IUBMB
Fragment: sequence database residues 89-319
Gene Name(s): rluC yceC b1086 JW1072

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACY
Query on ACY

A, B ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.185
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.31 α = 90.00
b = 97.31 β = 90.00
c = 86.24 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-10-08
  • Released Date: 2005-10-04
  • Deposition author(s): Del Campo, M., Ofengand, J., Fenna, R., Malhotra, A.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4