1VLB

STRUCTURE REFINEMENT OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO GIGAS AT 1.28 A

Structural Biology Knowledgebase: 1VLB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1VLB

Classification: Oxidoreductase

Total Structure Weight: 98612.46

Macromolecule Entities
Molecule Chains Length Organism Details
ALDEHYDE OXIDOREDUCTASE A 907 Desulfovibrio gigas EC#: 1.2.99.7 IUBMB
Gene Name(s): mop

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PCD
Query on PCD

A (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)- DIOXO-AQUA-MOLYBDENUM(V)
MOLYBDENUM COFACTOR; MOCO (Synonym)
C19 H26 Mo N8 O16 P2 S2
YEBYDVFRFUQMER-NBXMTLLYDD
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

A FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.145
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 141.78 α = 90.00
b = 141.78 β = 90.00
c = 160.87 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-07-20
  • Released Date: 2004-07-27
  • Deposition author(s): Rebelo, J.M., Dias, J.M., Huber, R., Moura, J.J.G., Romao, M.J.
  • Previous versions: 1ALO 1HLR

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4