1V9F

Crystal structure of catalytic domain of pseudouridine synthase RluD from Escherichia coli

Structural Biology Knowledgebase: 1V9F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1V9F

Classification: LYASE

Total Structure Weight: 37144.77

Macromolecule Entities
Molecule Chains Length Organism Details
Ribosomal large subunit pseudouridine synthase D A 325 Escherichia coli EC#: 5.4.99.23 IUBMB
Gene Name(s): rluD sfhB yfiI b2594 JW2576
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.200
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 74.51 α = 90.00
b = 74.51 β = 90.00
c = 265.01 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-26
  • Released Date: 2004-05-18
  • Deposition author(s): Mizutani, K., Machida, Y., Unzai, S., Park, S.-Y., Tame, J.R.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4